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HL7CGModels - Local Development build (v0.1.0). See the Directory of published versions

Logical Model: Molecular Variant

Official URL: http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularVariant Version: 0.1.0
Active as of 2022-03-10 Computable Name: MolecularVariant

MolecularVariant resource

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

This structure is derived from DomainResource

Summary

Mandatory: 0 element (15 nested mandatory elements)

Structures

This structure refers to these other structures:

This structure is derived from DomainResource

NameFlagsCard.TypeDescription & Constraintsdoco
.. MolecularVariant 0..*DomainResourceMolecular Variant
... molecularType 0..1CodeableConceptMolecule type
... primaryRepresentation 1..1BackboneElementPrimary Representation
.... identifier 0..1CodeableConceptIdentifer
.... text 0..1BackboneElementText
..... value 1..1stringValue
..... system 1..1CodeableConceptSystem
.... sequence 0..1BackboneElementSequence
..... system 1..1CodeableConceptSystem
..... referenceSequence[x] 1..1Reference Sequence
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignation
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignation
..... interval 1..1http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularPreciseIntervalInterval
..... referenceAllele 0..1Reference(Molecular Sequence)Reference Allele
..... alternateAllele 1..1Reference(Molecular Sequence)Alternate Allele
... secondaryRepresentation 0..*BackboneElementSecondary Representation(s)
.... identifier 0..1CodeableConceptIdentifer
.... text 0..1BackboneElementText
..... value 1..1stringValue
..... system 1..1CodeableConceptSystem
.... sequence 0..1BackboneElementSequence
..... system 1..1CodeableConceptSystem
..... referenceSequence[x] 1..1Reference Sequence
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignation
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignation
..... interval 1..1http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularPreciseIntervalInterval
..... referenceAllele 0..1Reference(Molecular Sequence)Reference Allele
..... alternateAllele 1..1Reference(Molecular Sequence)Alternate Allele
.... type 1..1CodeableConceptType
.... description 0..1stringDescription
.... relatedVariant 1..1Reference(Molecular Variant)Related Variant

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. MolecularVariant 0..*DomainResourceMolecular Variant
... meta Σ0..1MetaMetadata about the resource
... implicitRules ?!Σ0..1uriA set of rules under which this content was created
... language 0..1codeLanguage of the resource content
Binding: CommonLanguages (preferred)
Max Binding: AllLanguages: A human language.

... contained 0..*ResourceContained, inline Resources
... Slices for extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
... Slices for modifierExtension ?!0..*ExtensionExtensions that cannot be ignored
Slice: Unordered, Open by value:url
... molecularType 0..1CodeableConceptMolecule type
... primaryRepresentation 1..1BackboneElementPrimary Representation
.... identifier 0..1CodeableConceptIdentifer
.... text 0..1BackboneElementText
..... value 1..1stringValue
..... system 1..1CodeableConceptSystem
.... sequence 0..1BackboneElementSequence
..... system 1..1CodeableConceptSystem
..... referenceSequence[x] 1..1Reference Sequence
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignation
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignation
..... interval 1..1http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularPreciseIntervalInterval
..... referenceAllele 0..1Reference(Molecular Sequence)Reference Allele
..... alternateAllele 1..1Reference(Molecular Sequence)Alternate Allele
... secondaryRepresentation 0..*BackboneElementSecondary Representation(s)
.... identifier 0..1CodeableConceptIdentifer
.... text 0..1BackboneElementText
..... value 1..1stringValue
..... system 1..1CodeableConceptSystem
.... sequence 0..1BackboneElementSequence
..... system 1..1CodeableConceptSystem
..... referenceSequence[x] 1..1Reference Sequence
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignation
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignation
..... interval 1..1http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularPreciseIntervalInterval
..... referenceAllele 0..1Reference(Molecular Sequence)Reference Allele
..... alternateAllele 1..1Reference(Molecular Sequence)Alternate Allele
... relationships 0..*BackboneElementRelationship to another Variant
.... type 1..1CodeableConceptType
.... description 0..1stringDescription
.... relatedVariant 1..1Reference(Molecular Variant)Related Variant

doco Documentation for this format

This structure is derived from DomainResource

Summary

Mandatory: 0 element (15 nested mandatory elements)

Structures

This structure refers to these other structures:

Differential View

This structure is derived from DomainResource

NameFlagsCard.TypeDescription & Constraintsdoco
.. MolecularVariant 0..*DomainResourceMolecular Variant
... molecularType 0..1CodeableConceptMolecule type
... primaryRepresentation 1..1BackboneElementPrimary Representation
.... identifier 0..1CodeableConceptIdentifer
.... text 0..1BackboneElementText
..... value 1..1stringValue
..... system 1..1CodeableConceptSystem
.... sequence 0..1BackboneElementSequence
..... system 1..1CodeableConceptSystem
..... referenceSequence[x] 1..1Reference Sequence
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignation
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignation
..... interval 1..1http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularPreciseIntervalInterval
..... referenceAllele 0..1Reference(Molecular Sequence)Reference Allele
..... alternateAllele 1..1Reference(Molecular Sequence)Alternate Allele
... secondaryRepresentation 0..*BackboneElementSecondary Representation(s)
.... identifier 0..1CodeableConceptIdentifer
.... text 0..1BackboneElementText
..... value 1..1stringValue
..... system 1..1CodeableConceptSystem
.... sequence 0..1BackboneElementSequence
..... system 1..1CodeableConceptSystem
..... referenceSequence[x] 1..1Reference Sequence
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignation
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignation
..... interval 1..1http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularPreciseIntervalInterval
..... referenceAllele 0..1Reference(Molecular Sequence)Reference Allele
..... alternateAllele 1..1Reference(Molecular Sequence)Alternate Allele
.... type 1..1CodeableConceptType
.... description 0..1stringDescription
.... relatedVariant 1..1Reference(Molecular Variant)Related Variant

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraintsdoco
.. MolecularVariant 0..*DomainResourceMolecular Variant
... meta Σ0..1MetaMetadata about the resource
... implicitRules ?!Σ0..1uriA set of rules under which this content was created
... language 0..1codeLanguage of the resource content
Binding: CommonLanguages (preferred)
Max Binding: AllLanguages: A human language.

... contained 0..*ResourceContained, inline Resources
... Slices for extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
... Slices for modifierExtension ?!0..*ExtensionExtensions that cannot be ignored
Slice: Unordered, Open by value:url
... molecularType 0..1CodeableConceptMolecule type
... primaryRepresentation 1..1BackboneElementPrimary Representation
.... identifier 0..1CodeableConceptIdentifer
.... text 0..1BackboneElementText
..... value 1..1stringValue
..... system 1..1CodeableConceptSystem
.... sequence 0..1BackboneElementSequence
..... system 1..1CodeableConceptSystem
..... referenceSequence[x] 1..1Reference Sequence
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignation
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignation
..... interval 1..1http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularPreciseIntervalInterval
..... referenceAllele 0..1Reference(Molecular Sequence)Reference Allele
..... alternateAllele 1..1Reference(Molecular Sequence)Alternate Allele
... secondaryRepresentation 0..*BackboneElementSecondary Representation(s)
.... identifier 0..1CodeableConceptIdentifer
.... text 0..1BackboneElementText
..... value 1..1stringValue
..... system 1..1CodeableConceptSystem
.... sequence 0..1BackboneElementSequence
..... system 1..1CodeableConceptSystem
..... referenceSequence[x] 1..1Reference Sequence
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/GenomeSequenceDesignation
...... referenceSequenceHttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignationhttp://hl7.org/fhir/uv/cg-model/StructureDefinition/IdentifierSequenceDesignation
..... interval 1..1http://hl7.org/fhir/uv/cg-model/StructureDefinition/MolecularPreciseIntervalInterval
..... referenceAllele 0..1Reference(Molecular Sequence)Reference Allele
..... alternateAllele 1..1Reference(Molecular Sequence)Alternate Allele
... relationships 0..*BackboneElementRelationship to another Variant
.... type 1..1CodeableConceptType
.... description 0..1stringDescription
.... relatedVariant 1..1Reference(Molecular Variant)Related Variant

doco Documentation for this format

 

Other representations of profile: CSV, Excel

Terminology Bindings

PathConformanceValueSet
MolecularVariant.languagepreferredCommonLanguages
Max Binding: AllLanguages

Constraints

IdGradePathDetailsRequirements
dom-2errorMolecularVariantIf the resource is contained in another resource, it SHALL NOT contain nested Resources
: contained.contained.empty()
dom-3errorMolecularVariantIf the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4errorMolecularVariantIf a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5errorMolecularVariantIf a resource is contained in another resource, it SHALL NOT have a security label
: contained.meta.security.empty()
dom-6Best PracticeMolecularVariantA resource should have narrative for robust management
: text.`div`.exists()
ele-1errorMolecularVariant.metaAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ele-1errorMolecularVariant.implicitRulesAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ele-1errorMolecularVariant.languageAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ele-1errorMolecularVariant.textAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ele-1errorMolecularVariant.extensionAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1errorMolecularVariant.extensionMust have either extensions or value[x], not both
: extension.exists() != value.exists()
ele-1errorMolecularVariant.modifierExtensionAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1errorMolecularVariant.modifierExtensionMust have either extensions or value[x], not both
: extension.exists() != value.exists()